diff v.1.1.0/Hammock/matrices/blosum30.txt @ 3:7950e4c52972 draft

Uploaded
author hammock
date Fri, 23 Jun 2017 05:40:22 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/v.1.1.0/Hammock/matrices/blosum30.txt	Fri Jun 23 05:40:22 2017 -0400
@@ -0,0 +1,31 @@
+#  Matrix made by matblas from blosum30.iij
+#  * column uses minimum score
+#  BLOSUM Clustered Scoring Matrix in 1/5 Bit Units
+#  Blocks Database = /data/blocks_5.0/blocks.dat
+#  Cluster Percentage: >= 30
+#  Entropy =   0.1424, Expected =  -0.1074
+   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
+A  4 -1  0  0 -3  1  0  0 -2  0 -1  0  1 -2 -1  1  1 -5 -4  1  0  0  0 -7 
+R -1  8 -2 -1 -2  3 -1 -2 -1 -3 -2  1  0 -1 -1 -1 -3  0  0 -1 -2  0 -1 -7 
+N  0 -2  8  1 -1 -1 -1  0 -1  0 -2  0  0 -1 -3  0  1 -7 -4 -2  4 -1  0 -7 
+D  0 -1  1  9 -3 -1  1 -1 -2 -4 -1  0 -3 -5 -1  0 -1 -4 -1 -2  5  0 -1 -7 
+C -3 -2 -1 -3 17 -2  1 -4 -5 -2  0 -3 -2 -3 -3 -2 -2 -2 -6 -2 -2  0 -2 -7 
+Q  1  3 -1 -1 -2  8  2 -2  0 -2 -2  0 -1 -3  0 -1  0 -1 -1 -3 -1  4  0 -7 
+E  0 -1 -1  1  1  2  6 -2  0 -3 -1  2 -1 -4  1  0 -2 -1 -2 -3  0  5 -1 -7 
+G  0 -2  0 -1 -4 -2 -2  8 -3 -1 -2 -1 -2 -3 -1  0 -2  1 -3 -3  0 -2 -1 -7 
+H -2 -1 -1 -2 -5  0  0 -3 14 -2 -1 -2  2 -3  1 -1 -2 -5  0 -3 -2  0 -1 -7 
+I  0 -3  0 -4 -2 -2 -3 -1 -2  6  2 -2  1  0 -3 -1  0 -3 -1  4 -2 -3  0 -7 
+L -1 -2 -2 -1  0 -2 -1 -2 -1  2  4 -2  2  2 -3 -2  0 -2  3  1 -1 -1  0 -7 
+K  0  1  0  0 -3  0  2 -1 -2 -2 -2  4  2 -1  1  0 -1 -2 -1 -2  0  1  0 -7 
+M  1  0  0 -3 -2 -1 -1 -2  2  1  2  2  6 -2 -4 -2  0 -3 -1  0 -2 -1  0 -7 
+F -2 -1 -1 -5 -3 -3 -4 -3 -3  0  2 -1 -2 10 -4 -1 -2  1  3  1 -3 -4 -1 -7 
+P -1 -1 -3 -1 -3  0  1 -1  1 -3 -3  1 -4 -4 11 -1  0 -3 -2 -4 -2  0 -1 -7 
+S  1 -1  0  0 -2 -1  0  0 -1 -1 -2  0 -2 -1 -1  4  2 -3 -2 -1  0 -1  0 -7 
+T  1 -3  1 -1 -2  0 -2 -2 -2  0  0 -1  0 -2  0  2  5 -5 -1  1  0 -1  0 -7 
+W -5  0 -7 -4 -2 -1 -1  1 -5 -3 -2 -2 -3  1 -3 -3 -5 20  5 -3 -5 -1 -2 -7 
+Y -4  0 -4 -1 -6 -1 -2 -3  0 -1  3 -1 -1  3 -2 -2 -1  5  9  1 -3 -2 -1 -7 
+V  1 -1 -2 -2 -2 -3 -3 -3 -3  4  1 -2  0  1 -4 -1  1 -3  1  5 -2 -3  0 -7 
+B  0 -2  4  5 -2 -1  0  0 -2 -2 -1  0 -2 -3 -2  0  0 -5 -3 -2  5  0 -1 -7 
+Z  0  0 -1  0  0  4  5 -2  0 -3 -1  1 -1 -4  0 -1 -1 -1 -2 -3  0  4  0 -7 
+X  0 -1  0 -1 -2  0 -1 -1 -1  0  0  0  0 -1 -1  0  0 -2 -1  0 -1  0 -1 -7 
+* -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7 -7  1