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diff Hammock/matrices/blosum55.txt @ 0:b1ac138f0287 draft

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author hammock
date Mon, 26 Jan 2015 06:24:21 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Hammock/matrices/blosum55.txt	Mon Jan 26 06:24:21 2015 -0500
@@ -0,0 +1,31 @@
+#  Matrix made by matblas from blosum55.iij
+#  * column uses minimum score
+#  BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
+#  Blocks Database = /data/blocks_5.0/blocks.dat
+#  Cluster Percentage: >= 55
+#  Entropy =   0.5637, Expected =  -0.4179
+   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *
+A  5 -2 -2 -2  0 -1 -1  0 -2 -2 -2 -1 -1 -3 -1  2  0 -4 -2  0 -2 -1 -1 -5 
+R -2  8 -1 -2 -4  1  0 -3  0 -4 -3  3 -2 -3 -3 -1 -1 -3 -2 -3 -1  0 -1 -5 
+N -2 -1  8  2 -3  0  0  0  1 -4 -4  0 -3 -4 -2  1  0 -5 -2 -4  4  0 -1 -5 
+D -2 -2  2  8 -4  0  2 -2 -1 -4 -5 -1 -4 -5 -2  0 -1 -5 -3 -4  5  1 -2 -5 
+C  0 -4 -3 -4 13 -4 -4 -3 -4 -2 -2 -4 -2 -3 -3 -1 -1 -4 -3 -1 -4 -4 -2 -5 
+Q -1  1  0  0 -4  7  2 -2  1 -4 -3  2  0 -4 -1  0 -1 -2 -1 -3  0  4 -1 -5 
+E -1  0  0  2 -4  2  7 -3 -1 -4 -4  1 -3 -4 -1  0 -1 -3 -2 -3  1  5 -1 -5 
+G  0 -3  0 -2 -3 -2 -3  8 -2 -5 -5 -2 -3 -4 -3  0 -2 -3 -4 -4 -1 -3 -2 -5 
+H -2  0  1 -1 -4  1 -1 -2 11 -4 -3  0 -2 -1 -3 -1 -2 -3  2 -4  0  0 -1 -5 
+I -2 -4 -4 -4 -2 -4 -4 -5 -4  6  2 -4  2  0 -3 -3 -1 -3 -1  4 -4 -4 -1 -5 
+L -2 -3 -4 -5 -2 -3 -4 -5 -3  2  6 -3  3  1 -4 -3 -2 -3 -1  1 -4 -3 -1 -5 
+K -1  3  0 -1 -4  2  1 -2  0 -4 -3  6 -2 -4 -1  0 -1 -4 -2 -3  0  1 -1 -5 
+M -1 -2 -3 -4 -2  0 -3 -3 -2  2  3 -2  8  0 -3 -2 -1 -2 -1  1 -3 -2 -1 -5 
+F -3 -3 -4 -5 -3 -4 -4 -4 -1  0  1 -4  0  9 -5 -3 -3  2  4 -1 -5 -4 -2 -5 
+P -1 -3 -2 -2 -3 -1 -1 -3 -3 -3 -4 -1 -3 -5 10 -1 -1 -5 -4 -3 -2 -1 -2 -5 
+S  2 -1  1  0 -1  0  0  0 -1 -3 -3  0 -2 -3 -1  5  2 -4 -2 -2  0  0 -1 -5 
+T  0 -1  0 -1 -1 -1 -1 -2 -2 -1 -2 -1 -1 -3 -1  2  6 -3 -2  0 -1 -1 -1 -5 
+W -4 -3 -5 -5 -4 -2 -3 -3 -3 -3 -3 -4 -2  2 -5 -4 -3 15  3 -4 -5 -3 -3 -5 
+Y -2 -2 -2 -3 -3 -1 -2 -4  2 -1 -1 -2 -1  4 -4 -2 -2  3  9 -2 -3 -2 -1 -5 
+V  0 -3 -4 -4 -1 -3 -3 -4 -4  4  1 -3  1 -1 -3 -2  0 -4 -2  5 -4 -3 -1 -5 
+B -2 -1  4  5 -4  0  1 -1  0 -4 -4  0 -3 -5 -2  0 -1 -5 -3 -4  5  2 -1 -5 
+Z -1  0  0  1 -4  4  5 -3  0 -4 -3  1 -2 -4 -1  0 -1 -3 -2 -3  2  5 -1 -5 
+X -1 -1 -1 -2 -2 -1 -1 -2 -1 -1 -1 -1 -1 -2 -2 -1 -1 -3 -1 -1 -1 -1 -1 -5 
+* -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5 -5  1