Mercurial > repos > hyungrolee > mgescan
comparison mgescan.xml @ 8:106ee0841650 draft
Uploaded
author | hyungrolee |
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date | Mon, 15 Feb 2016 03:38:32 -0500 |
parents | 7658ef159fd8 |
children | 89461b062f91 |
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7:b14f55bb20be | 8:106ee0841650 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 | 2 <tool name="MGEScan" id="mgescan" version="3.0.0"> |
3 <tool name="MGEScan" id="mgescan" version="0.0.2"> | |
4 <description> | 3 <description> |
5 MGEScan | 4 MGEScan |
6 </description> | 5 </description> |
7 <requirements> | 6 <requirements> |
8 <requirement type="package" version="3.0">mgescan</requirement> | 7 <requirement type="package" version="3.0.0">mgescan</requirement> |
8 <requirement type="package" version="4.0.0">tandem_repeats_finder</requirement> | |
9 </requirements> | 9 </requirements> |
10 <version_command>mgescan --version</version_command> | 10 <version_command>mgescan --version</version_command> |
11 <command interpreter="bash"> | 11 <command interpreter="bash"> |
12 mgescan.sh $input '$input.name' 3 $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 $both_gff3 $mpi_yn.nmpi | 12 mgescan.sh $input '$input.name' 3 $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 $both_gff3 $mpi_yn.nmpi |
13 <!-- mgescan.sh $input $input.name $hmmver $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 --> | 13 <!-- mgescan.sh $input $input.name $hmmver $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 --> |