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comparison mgescan.sh @ 12:1a143426370c draft

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author hyungrolee
date Mon, 15 Feb 2016 04:15:01 -0500
parents b14f55bb20be
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11:89461b062f91 12:1a143426370c
49 49
50 # /nfs/nfs4/home/lee212/mgescan/galaxy-dist/tools/mgescan/find_ltr.sh /nfs/nfs4/home/lee212/mgescan/galaxy-dist/database/files/000/dataset_1.dat /nfs/nfs4/home/lee212/mgescan/galaxy-dist/database/files/000/dataset_3.dat 50 # /nfs/nfs4/home/lee212/mgescan/galaxy-dist/tools/mgescan/find_ltr.sh /nfs/nfs4/home/lee212/mgescan/galaxy-dist/database/files/000/dataset_1.dat /nfs/nfs4/home/lee212/mgescan/galaxy-dist/database/files/000/dataset_3.dat
51 51
52 #set path for transeq 52 #set path for transeq
53 #export PATH=$user_dir/mgescan/EMBOSS/bin:/usr/bin:$PATH 53 #export PATH=$user_dir/mgescan/EMBOSS/bin:/usr/bin:$PATH
54 transeq --version 2> /dev/null 54 if [ "" == "`which transeq`" ]
55 res=$?
56 if [ 0 -ne $res ]
57 then 55 then
58 echo "EMBOSS is not available." 56 echo "EMBOSS is not available."
59 exit 57 exit
60 fi 58 fi
61 59