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comparison mgescan.xml @ 11:89461b062f91 draft

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Uploaded
author hyungrolee
date Mon, 15 Feb 2016 04:08:37 -0500
parents 106ee0841650
children 3d8b6dfd5743
comparison
equal deleted inserted replaced
10:4ca286bd52d7 11:89461b062f91
4 MGEScan 4 MGEScan
5 </description> 5 </description>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="3.0.0">mgescan</requirement> 7 <requirement type="package" version="3.0.0">mgescan</requirement>
8 <requirement type="package" version="4.0.0">tandem_repeats_finder</requirement> 8 <requirement type="package" version="4.0.0">tandem_repeats_finder</requirement>
9 <requirement type="package" version="5.0.0">emboss</requirement>
9 </requirements> 10 </requirements>
10 <version_command>mgescan --version</version_command> 11 <version_command>mgescan --version</version_command>
11 <command interpreter="bash"> 12 <command interpreter="bash">
12 mgescan.sh $input '$input.name' 3 $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 $both_gff3 $mpi_yn.nmpi 13 mgescan.sh $input '$input.name' 3 $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 $both_gff3 $mpi_yn.nmpi
13 <!-- mgescan.sh $input $input.name $hmmver $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 --> 14 <!-- mgescan.sh $input $input.name $hmmver $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 -->