Mercurial > repos > hyungrolee > mgescan_test

comparison mgescan.xml @ 4:33dfa472f8ef draft

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author hyungrolee
date Mon, 15 Feb 2016 01:50:27 -0500
parents 2672622e9ca9
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3:1b1cc6a28663 4:33dfa472f8ef
2 2
3 <tool name="MGEScan" id="mgescan" version="0.0.2"> 3 <tool name="MGEScan" id="mgescan" version="0.0.2">
4 <description> 4 <description>
5 MGEScan 5 MGEScan
6 </description> 6 </description>
7 <requirements>
8 <requirement type="package" version="3.0">mgescan</requirement>
9 </requirements>
10 <version_command>mgescan --version</version_command>
7 <command interpreter="bash"> 11 <command interpreter="bash">
8 mgescan.sh $input '$input.name' 3 $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 $both_gff3 $mpi_yn.nmpi 12 mgescan.sh $input '$input.name' 3 $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 $both_gff3 $mpi_yn.nmpi
9 <!-- mgescan.sh $input $input.name $hmmver $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 --> 13 <!-- mgescan.sh $input $input.name $hmmver $output $program $clade $qvalue_en $qvalue_rt $ltr_gff3 $nonltr_gff3 -->
10 </command> 14 </command>
11 <inputs> 15 <inputs>