Mercurial > repos > idot > coverage_correlation
annotate mkCorr.sh @ 11:74bfa2464411
the bioconductor GRanges stuff blows
| author | Ido Tamir <ido.tamir@imp.ac.at> |
|---|---|
| date | Sun, 18 Aug 2013 19:39:52 +0200 |
| parents | 9abd178b46bd |
| children | 5a4cbfb5fbc5 |
| rev | line source |
|---|---|
| 1 | 1 #!/bin/sh |
| 2 TOOLDIR="$( cd -P "$( dirname "${BASH_SOURCE[0]}" )" && pwd )" | |
| 3 | |
| 4 #echo "running corr" | |
| 5 #echo $PWD | |
| 6 | |
| 3 | 7 module () { |
| 8 eval `/usr/bin/modulecmd bash $*` | |
| 9 } | |
| 1 | 10 |
| 11 if [ -f /biosw/modules/init/modules-env.sh ]; then | |
| 12 module load R/3.0.0 | |
| 13 fi; | |
| 14 | |
| 15 cp $TOOLDIR/corr.R $PWD | |
| 16 | |
| 5 | 17 ./corr.R "$@" >> err.log 2>&1 |
| 1 | 18 |
| 19 if [ $? -eq 0 ] | |
| 20 then | |
| 21 echo 'correlation result' | |
| 22 exit 0 | |
| 23 else | |
| 24 cat err.log >&2 | |
| 25 exit 1 | |
| 26 fi |