annotate mkCorr.sh @ 11:74bfa2464411

the bioconductor GRanges stuff blows
author Ido Tamir <ido.tamir@imp.ac.at>
date Sun, 18 Aug 2013 19:39:52 +0200
parents 9abd178b46bd
children 5a4cbfb5fbc5
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1 #!/bin/sh
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2 TOOLDIR="$( cd -P "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
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4 #echo "running corr"
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5 #echo $PWD
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7 module () {
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8 eval `/usr/bin/modulecmd bash $*`
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9 }
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11 if [ -f /biosw/modules/init/modules-env.sh ]; then
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12 module load R/3.0.0
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13 fi;
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14
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15 cp $TOOLDIR/corr.R $PWD
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17 ./corr.R "$@" >> err.log 2>&1
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18
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19 if [ $? -eq 0 ]
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20 then
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21 echo 'correlation result'
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22 exit 0
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23 else
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24 cat err.log >&2
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25 exit 1
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26 fi