Mercurial > repos > idot > coverage_correlation

comparison corr.xml @ 13:de452b96da8e

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added bam input
author Ido Tamir <ido.tamir@imp.ac.at>
date Mon, 23 Sep 2013 13:46:24 +0200
parents 6df7b07f81c1
children
comparison
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12:f3e037496c18 13:de452b96da8e
38 is calculated by using the union of all the regions that are covered in the tracks. 38 is calculated by using the union of all the regions that are covered in the tracks.
39 39
40 Requirements: 40 Requirements:
41 ------------- 41 -------------
42 42
43 At least two files of 6 column bed, wig(?) or bigWig format 43 At least two files of 6 column bed, wig, bam or bigWig format
44 44
45 Outputs: 45 Outputs:
46 -------- 46 --------
47 Plot of pearson clustering of correlation coefficient. 47 Plot of pearson clustering of correlation coefficient.
48 Matrix of pearson correlation coefficients. 48 Matrix of pearson correlation coefficients.
50 Please turn to *Ido Tamir* in case of problems or suggestions for this tool. 50 Please turn to *Ido Tamir* in case of problems or suggestions for this tool.
51 51
52 TODO: 52 TODO:
53 ----- 53 -----
54 - Add mappability track option 54 - Add mappability track option
55 - Add bam as input
56 </help> 55 </help>
57 </tool> 56 </tool>
58 57
59 58
60 59