annotate README.md @ 0:8ea9b4e5a389

Uploaded
author g2cmnty@test-web1.g2.bx.psu.edu
date Wed, 22 Jun 2011 03:28:25 -0400
parents
children cc6707a1e044
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
1 prop_venn
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
2 ---------
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
3
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
4 crates proportional venn diagrams from 2 or 3 files using google charts.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
5 pure python implementation
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
6
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
7 contains galaxy tool xml (prop_venn.xml)
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
8
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
9 cli interface expects all arguments for the inputs concatenated
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
10 with , i.e. file1,file2,file3 ...
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
11
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
12 contains an integration test for the cli interface (vennerTest.py), no galaxy unit tests.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
13
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
14
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
15
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
16 Proportional Venn Diagram:
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
17 --------------------------
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
18 Creates a proportional Venn diagram from 2 or 3 tab delimited input files.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
19 The 0 based column index decides which column is used for extracting the sets to compare between the files.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
20 Multiple items with the same value per column are counted as one.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
21
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
22 Requirements:
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
23 -------------
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
24 - 2-3 tab delimited input files.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
25 - 0 based index of the columns to extract for each file
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
26
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
27 Outputs:
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
28 --------
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
29 - Html page with the proportional Venn diagram and a table for the counts in each section.
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
30
8ea9b4e5a389 Uploaded
g2cmnty@test-web1.g2.bx.psu.edu
parents:
diff changeset
31