Mercurial > repos > ieguinoa > data_manager_fetch_gff

comparison data_manager_conf.xml @ 0:ac4fde07eaed draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author ieguinoa
date Mon, 09 Jul 2018 11:58:50 -0400
parents
children 955a8d483fa3
comparison
equal deleted inserted replaced
-1:000000000000 0:ac4fde07eaed
1 <data_manager tool_file="data_manager/data_manager_fetch_gff.xml" id="data_manager_fetch_gff">
2 <data_table name="all_gff">
3 <output>
4 <column name="value" />
5 <column name="dbkey" />
6 <column name="name" />
7 <column name="path" output_ref="out_file">
8 <move type="file">
9 <source>${path}</source>
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/gff/${path}</target>
11 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/gff/${path}</value_translation>
13 <value_translation type="function">abspath</value_translation>
14 </column>
15 </output>
16 </data_table>
17 <data_table name="representative_gff">
18 <output>
19 <column name="value" />
20 <column name="dbkey" />
21 <column name="name" />
22 <column name="path" output_ref="out_file">
23 <move type="file">
24 <source>${path}</source>
25 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/representative_gff/${path}</target>
26 </move>
27 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/representative_gff/${path}</value_translation>
28 <value_translation type="function">abspath</value_translation>
29 </column>
30 </output>
31 </data_table>
32
33 <data_table name="__dbkeys__">
34 <output>
35 <column name="value" />
36 <column name="name" />
37 <column name="len_path" output_ref="out_file">
38 <move type="file">
39 <source>${len_path}</source>
40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target>
41 </move>
42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation>
43 <value_translation type="function">abspath</value_translation>
44 </column>
45 </output>
46 </data_table>
47 </data_manager>