Mercurial > repos > ieguinoa > data_manager_fetch_gff
diff data_manager/data_manager_fetch_gff.xml @ 2:c57bd7f3fb46 draft
Uploaded
author | ieguinoa |
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date | Tue, 10 Jul 2018 10:55:47 -0400 |
parents | ac4fde07eaed |
children | cb0fa3584aeb |
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--- a/data_manager/data_manager_fetch_gff.xml Tue Jul 10 05:30:23 2018 -0400 +++ b/data_manager/data_manager_fetch_gff.xml Tue Jul 10 10:55:47 2018 -0400 @@ -3,11 +3,7 @@ <command><![CDATA[ python "$__tool_directory__"/data_manager_fetch_gff.py "${out_file}" --type $file_type - #if str( $dbkey_source.dbkey_source_selector ) == 'existing': - --dbkey_description ${ dbkey_source.dbkey.get_display_text() } - #else - --dbkey_description "${ dbkey_source.dbkey_name or $dbkey_source.dbkey }" - #end if + --dbkey_description ${ dbkey.get_display_text() } ]]></command> <inputs> @@ -16,19 +12,7 @@ <option value="full">GFF with complete features</option> </param> - <conditional name="dbkey_source"> - <param name="dbkey_source_selector" type="select" label="Use existing dbkey or create a new one."> - <option value="existing" selected="True">Existing</option> - <option value="new">New</option> - </param> - <when value="existing"> - <param name="dbkey" type="genomebuild" label="DBKEY to assign to data" /> - </when> - <when value="new"> - <param type="text" name="dbkey" value="" label="dbkey" optional="False" /> - <param type="text" name="dbkey_name" value="" label="Display name for dbkey" /> - </when> - </conditional> + <param name="dbkey" type="genomebuild" label="DBKEY to assign to data" /> <param type="text" name="sequence_name" value="" label="Name of sequence" /> <param type="text" name="sequence_id" value="" label="ID for sequence" /> <conditional name="reference_source">