Mercurial > repos > ieguinoa > data_manager_fetch_gff

changeset 5:0bdfe2e85fb0 draft default tip

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Uploaded
author ieguinoa
date Thu, 15 Nov 2018 12:10:24 -0500
parents 4b10131cb66d
children
files data_manager/data_manager_fetch_gff.py tool-data/representative_gff.loc.sample
diffstat 2 files changed, 2 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/data_manager_fetch_gff.py	Tue Oct 09 14:36:26 2018 -0400
+++ b/data_manager/data_manager_fetch_gff.py	Thu Nov 15 12:10:24 2018 -0500
@@ -39,7 +39,7 @@
 
 
 def get_dbkey_dbname_id_name( params, dbkey_description=None ):
-#    dbkey = params['param_dict']['dbkey_source']['dbkey']
+    dbkey = params['param_dict']['dbkey']
     #TODO: ensure sequence_id is unique and does not already appear in location file
     sequence_id = params['param_dict']['sequence_id']
     if not sequence_id:
@@ -50,8 +50,7 @@
 #        if not dbkey_name:
 #            dbkey_name = dbkey
 #    else:
-#        dbkey_name = None
-    dbkey = params['param_dict']['dbkey'] 
+#        dbkey_name = None 
     dbkey_name = dbkey_description
     sequence_name = params['param_dict']['sequence_name']
     if not sequence_name:
--- a/tool-data/representative_gff.loc.sample	Tue Oct 09 14:36:26 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,3 +0,0 @@
-#The representative_gff.loc file has this format:
-#
-#<unique_build_id>	<dbkey>	<display_name>	<path_to_gff_file>