Mercurial > repos > ieguinoa > data_manager_salmon_index_builder

comparison tool_data_table_conf.xml.sample @ 3:3d12fd3b7cae draft

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author ieguinoa
date Fri, 19 Oct 2018 10:26:13 -0400
parents c5dea2080109
children d22f69a2e80e
comparison
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2:f7d9182bdcab 3:3d12fd3b7cae
1 <tables> 1 <tables>
2 <!-- Locations of all fasta files under genome directory --> 2 <!-- Locations of indexes in salmon mapper format -->
3 <table name="all_fasta" comment_char="#" allow_duplicate_entries="False">
4 <columns>value, dbkey, name, path</columns>
5 <file path="tool-data/all_fasta.loc" />
6 </table>
7 <!-- Locations of indexes in the kallisto mapper format -->
8 <table name="salmon_indexes" comment_char="#" allow_duplicate_entries="False"> 3 <table name="salmon_indexes" comment_char="#" allow_duplicate_entries="False">
9 <columns>value, dbkey, name, path</columns> 4 <columns>value, dbkey, name, path</columns>
10 <file path="tool-data/salmon_indexes.loc" /> 5 <file path="tool-data/salmon_indexes.loc" />
11 </table> 6 </table>
12 </tables> 7 </tables>