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comparison data_manager/salmon_index_builder.xml @ 8:cbe62bd6e149 draft

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author ieguinoa
date Tue, 23 Jul 2019 11:12:15 -0400
parents d22f69a2e80e
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7:954d617c323d 8:cbe62bd6e149
10 python '$__tool_directory__/salmon_index_builder.py' --output '${out_file}' 10 python '$__tool_directory__/salmon_index_builder.py' --output '${out_file}'
11 --fasta_filename '${all_fasta_source.fields.path}' 11 --fasta_filename '${all_fasta_source.fields.path}'
12 --fasta_dbkey '${all_fasta_source.fields.dbkey}' 12 --fasta_dbkey '${all_fasta_source.fields.dbkey}'
13 --fasta_description '${all_fasta_source.fields.name}' 13 --fasta_description '${all_fasta_source.fields.name}'
14 --kmer_size "${kmer_size}" 14 --kmer_size "${kmer_size}"
15 --data_table_name salmon_indexes 15 --data_table_name salmon_indexes_versioned
16 --index_version @IDX_VERSION@ 16 --index_version @IDX_VERSION@
17 ]]> 17 ]]>
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param label="Source FASTA Sequence" name="all_fasta_source" type="select"> 20 <param label="Source FASTA Sequence" name="all_fasta_source" type="select">