--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.shed.yml	Tue Aug 14 11:19:49 2018 -0400
@@ -0,0 +1,19 @@
+categories:
+- Data Managers
+description: Pre-generate indexes for Salmon
+homepage_url: https://github.com/COMBINE-lab/salmon
+long_description: |
+  Salmon is a wicked-fast program to produce a highly-accurate, 
+  transcript-level quantification estimates from RNA-seq data. 
+  Salmon achieves is accuracy and speed via a number of different innovations, 
+  including the use of quasi-mapping (accurate but fast-to-compute proxies for traditional read alignments), 
+  and massively-parallel stochastic collapsed variational inference. 
+  The result is a versatile tool that fits nicely into many differnt pipelines. 
+  For example, you can choose to make use of our quasi-mapping algorithm by providing 
+  Salmon with raw sequencing reads, or, if it is more convenient, you can provide 
+  Salmon with regular alignments (e.g. an unsorted BAM file produced with your favorite aligner), 
+  and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.
+name: data_manager_salmon_index_builder
+owner: iuc
+remote_repository_url: https://github.com/ieguinoa/data_manager_salmon_index_builder
+type: unrestricted