Mercurial > repos > ieguinoa > data_manager_salmon_index_builder
diff data_manager/salmon_index_builder.xml @ 6:d22f69a2e80e draft
Uploaded
author | ieguinoa |
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date | Tue, 23 Jul 2019 09:25:04 -0400 |
parents | c5dea2080109 |
children | cbe62bd6e149 |
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--- a/data_manager/salmon_index_builder.xml Thu Jan 03 10:51:18 2019 -0500 +++ b/data_manager/salmon_index_builder.xml Tue Jul 23 09:25:04 2019 -0400 @@ -1,8 +1,11 @@ <tool id="salmon_index_builder_data_manager" name="Salmon" tool_type="manage_data" version="0.9.1"> <description>index builder</description> <requirements> - <requirement type="package" version="0.9.1">salmon</requirement> + <requirement type="package" version="0.11.2">salmon</requirement> </requirements> + <macros> + <token name="@IDX_VERSION@">q5</token> + </macros> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/salmon_index_builder.py' --output '${out_file}' --fasta_filename '${all_fasta_source.fields.path}' @@ -10,6 +13,7 @@ --fasta_description '${all_fasta_source.fields.name}' --kmer_size "${kmer_size}" --data_table_name salmon_indexes + --index_version @IDX_VERSION@ ]]> </command> <inputs>