# HG changeset patch
# User ieguinoa
# Date 1539959173 14400
# Node ID 3d12fd3b7caec2bf5288cfcf23cc9c3949aab8fb
# Parent  f7d9182bdcab3d6f3071eda47f79f54f4e64d4f3
Uploaded

diff -r f7d9182bdcab -r 3d12fd3b7cae tool-data/all_fasta.loc.sample
--- a/tool-data/all_fasta.loc.sample	Fri Oct 19 09:53:44 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-#This file lists the locations and dbkeys of all the fasta files
-#under the "genome" directory (a directory that contains a directory
-#for each build). The script extract_fasta.py will generate the file
-#all_fasta.loc. This file has the format (white space characters are
-#TAB characters):
-#
-#<unique_build_id>	<dbkey>	<display_name>	<file_path>
-#
-#So, all_fasta.loc could look something like this:
-#
-#apiMel3	apiMel3	Honeybee (Apis mellifera): apiMel3	/path/to/genome/apiMel3/apiMel3.fa
-#hg19canon	hg19	Human (Homo sapiens): hg19 Canonical	/path/to/genome/hg19/hg19canon.fa
-#hg19full	hg19	Human (Homo sapiens): hg19 Full	/path/to/genome/hg19/hg19full.fa
-#
-#Your all_fasta.loc file should contain an entry for each individual
-#fasta file. So there will be multiple fasta files for each build,
-#such as with hg19 above.
-#
diff -r f7d9182bdcab -r 3d12fd3b7cae tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Fri Oct 19 09:53:44 2018 -0400
+++ b/tool_data_table_conf.xml.sample	Fri Oct 19 10:26:13 2018 -0400
@@ -1,10 +1,5 @@
 <tables>
-    <!-- Locations of all fasta files under genome directory -->
-    <table name="all_fasta" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, dbkey, name, path</columns>
-        <file path="tool-data/all_fasta.loc" />
-    </table>
-    <!-- Locations of indexes in the kallisto mapper format -->
+    <!-- Locations of indexes in salmon mapper format -->
     <table name="salmon_indexes" comment_char="#" allow_duplicate_entries="False">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/salmon_indexes.loc" />