# HG changeset patch
# User ieguinoa
# Date 1539957224 14400
# Node ID f7d9182bdcab3d6f3071eda47f79f54f4e64d4f3
# Parent  c5dea2080109f5ec3c77bc00a2898284364f2dd8
Uploaded

diff -r c5dea2080109 -r f7d9182bdcab data_manager/salmon_index_builder.py
--- a/data_manager/salmon_index_builder.py	Tue Aug 14 11:19:49 2018 -0400
+++ b/data_manager/salmon_index_builder.py	Fri Oct 19 09:53:44 2018 -0400
@@ -30,6 +30,7 @@
     target_directory = params[ 'output_data' ][0]['extra_files_path']
     if not os.path.exists( target_directory ):
         os.mkdir( target_directory )
+    args = [ 'salmon', 'index' ]
     if options.kmer_size != '':
         args.append('-k')
         args.append(options.kmer_size)