Mercurial > repos > ieguinoa > ena_upload
diff samples_macros.xml @ 2:2f7a70c0d3ab draft default tip
Uploaded
author | ieguinoa |
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date | Mon, 21 Feb 2022 14:22:53 +0000 |
parents | 5d59238cd3f4 |
children |
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--- a/samples_macros.xml Wed Feb 02 17:30:12 2022 +0000 +++ b/samples_macros.xml Mon Feb 21 14:22:53 2022 +0000 @@ -67,14 +67,14 @@ <xml name="table_inputs_macro"> <conditional name="input_format_conditional"> <param name="input_format" type="select" label="Would you like to submit pregenerated table files or interactively define the input structures?"> - <option value="excel_tables" selected="True">User generated metadata tables based on Excel templates</option> + <option value="excel_tables" selected="True">User generated metadata tables based on Excel template</option> <option value="build_tables" selected="False">Interactive generation of the study structure (recommended for small studies)</option> <option value="user_generated_tables" selected="False">User generated tabular files (studies - samples - experiments - runs) </option> </param> <when value="excel_tables"> <!--<param name="viral_submission" type="boolean" label="Does your submission data belong to a viral sample?" help="If you select yes then your data will be submitted using the ENA virus pathogen reporting standard checklist (see: https://ena-browser-docs.readthedocs.io/en/latest/help_and_guides/sars-cov-2-submissions.html)" />--> <expand macro="checklist_input_macro"/> - <param name="xlsx_file" type="data" format="xlsx" label="Select Excel (xlsx) file based on templates" /> + <param name="xlsx_file" type="data" format="xlsx" label="Select Excel (xlsx) file based on template" /> <expand macro="run_inputs_macro" /> </when> <when value="user_generated_tables"> @@ -207,7 +207,7 @@ <param name="sample_title" type="text" label="Sample title"/> <param name="sample_description" type="text" help="e.g: liver cells" label="Describe the type of sample"/> <param name="scientific_name" type="text" label="Enter the species of the sample" help="e.g Severe acute respiratory syndrome coronavirus 2"/> - <param name="tax_id" type="text" label="Enter the taxonomic ID corresponding to the sample species" /> + <param name="tax_id" type="integer" value="0" label="Enter the taxonomic ID corresponding to the sample species" /> <repeat name="rep_experiment" title="Sequencing experiments performed with this sample" min="1" > <param name="experiment_title" type="text" label="Specify an experiment title" /> <param name="experiment_design" type="text" label="Describe the experiment design" />