Mercurial > repos > ieguinoa > ena_webin_cli

comparison test-data/receipt_sample_noPhiX.txt @ 3:7d751b5943b0 draft default tip

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author ieguinoa
date Tue, 22 Feb 2022 11:03:34 +0000
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2:1ecd8ce07db4 3:7d751b5943b0
1 YAML -------------
2 ENA_experiment:
3 0:
4 alias: exp_test_alias_001
5 design_description: Lot's of coffe and magic
6 insert_size: 250.0
7 instrument_model: NextSeq 500
8 library_construction_protocol: Illumina COVIDSeq Test Kit
9 library_layout: PAIRED
10 library_name: Cov51
11 library_selection: RT-PCR
12 library_source: VIRAL RNA
13 library_strategy: AMPLICON
14 platform: ILLUMINA
15 sample_alias: sample_alias_001
16 study_alias: study_alias_001
17 title: Illumina NextSeq paired end sequencing; Illumina COVIDSeq Test
18 ENA_run:
19 2:
20 alias: run_alias_001
21 experiment_alias: exp_test_alias_001
22 file_format: FASTQ
23 file_name: run001.fastq.gz
24 ENA_sample:
25 2:
26 alias: sample_alias_001
27 collecting institution: Umbrella Corp.
28 collection date: '2021-05-03'
29 collector name: "John Doe"
30 definition for seropositive sample: ''
31 ENA_study:
32 2:
33 alias: study_alias_001
34 study_abstract: "Help"
35 study_type: Whole Genome Sequencing
36 title: Whole genome sequencing of SARS-CoV-2
37 YAML -------------
38
39 Printing receipt to ./receipt.xml
40
41 Submission was done successfully
42
43 Study accession details:
44 study_alias_001 FAKE0001 2011-01-16T10:52:06.497+01:00 added
45
46 Sample accession details:
47 sample_alias_001 FAKESAMP001 2011-01-16T10:52:06.497+01:00 added
48
49 Saving updates in new tsv tables::
50 save updates in ./submission_files/studies_updated.tsv
51 save updates in ./submission_files/samples_updated.tsv
52 save updates in ./submission_files/experiments_updated.tsv
53 save updates in ./submission_files/runs_updated.tsv
54 action_option add