<tool id="load_reference_datasets" name="Load built-in reference data to history" version="0.0.1" >
<command><![CDATA[
#if $input_source.table_type_selector == "gff":
    out_name=\$(sed 's/ /_/g' <<< "$input_source.gff.fields.name");
    cp $input_source.gff.fields.path \$out_name.gff;
#else:
    out_name=\$(sed 's/ /_/g' <<< "$input_source.fasta.fields.name");
    cp $input_source.fasta.fields.path \$out_name.fasta;
#end if
    ]]></command>
    <inputs>
        <conditional name="input_source">
           <param name="table_type_selector" type="select" label="Select the type of file you want to access">
               <option value="gff" selected='True'>Annotations (GFF/GTF) files</option>
               <option value="fasta">FASTA Files (Genomes files / cDNA / etc)</option>
            </param>
            <when value="full">
                 <param name="gff" type="select" label="Select the annotation file from the list" help="If your genome of interest is not listed contact the Galaxy admin">
                     <options from_data_table="all_gff"/>
                 </param>
            </when>
            <when value="fasta">
                 <param name="fasta" type="select" label="Select the FASTA file from the list" help="if your genome of interest is not listed contact the Galaxy admin">
                     <options from_data_table="all_fasta"/>
                 </param>

            </when>
        </conditional>
    </inputs>
    <outputs>
        <data name="copied_file" label="">
        <discover_datasets pattern="__designation_and_ext__" visible="true" />
        </data>
   </outputs>
    <help>
**What it does**

This tool allows loading different built-in datasets into your history using the same data tables access that any other tool uses.


    </help>
</tool>