Mercurial > repos > imgteam > 2d_feature_extraction

comparison 2d_feature_extraction.py @ 3:5791a7f65275 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_feature_extraction/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:00:56 -0500
parents 6fdb3542a406
children 0a53256b48c6
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2:6fdb3542a406 3:5791a7f65275
45 parser.add_argument('label_file', type=argparse.FileType('r'), 45 parser.add_argument('label_file', type=argparse.FileType('r'),
46 help='Label input file') 46 help='Label input file')
47 parser.add_argument('output_file', type=argparse.FileType('w'), 47 parser.add_argument('output_file', type=argparse.FileType('w'),
48 help='Tabular output file') 48 help='Tabular output file')
49 args = parser.parse_args() 49 args = parser.parse_args()
50 50
51 label_file_binary = args.label_file_binary 51 label_file_binary = args.label_file_binary
52 label_file = args.label_file.name 52 label_file = args.label_file.name
53 out_file = args.output_file.name 53 out_file = args.output_file.name
54 add_patch = args.add_roi_patches 54 add_patch = args.add_roi_patches
55 55