Mercurial > repos > imgteam > 2d_feature_extraction

comparison 2d_feature_extraction.xml @ 7:6a2b26c297a4 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_feature_extraction/ commit 8e99ddb62ceab1da15996906a0813826b62d38fe
author imgteam
date Wed, 17 Dec 2025 11:23:18 +0000
parents 5bc8cdc17fd0
children 0b5ddf7b2924
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6:5bc8cdc17fd0 7:6a2b26c297a4
4 <import>creators.xml</import> 4 <import>creators.xml</import>
5 <token name="@TOOL_VERSION@">0.18.1</token> 5 <token name="@TOOL_VERSION@">0.18.1</token>
6 <token name="@VERSION_SUFFIX@">0</token> 6 <token name="@VERSION_SUFFIX@">0</token>
7 </macros> 7 </macros>
8 <creator> 8 <creator>
9 <expand macro="creators/bmcv" /> 9 <expand macro="creators/bmcv"/>
10 </creator> 10 </creator>
11 <edam_operations> 11 <edam_operations>
12 <edam_operation>operation_3443</edam_operation> 12 <edam_operation>operation_3443</edam_operation>
13 </edam_operations> 13 </edam_operations>
14 <xrefs> 14 <xrefs>
15 <xref type="bio.tools">scikit-image</xref> 15 <xref type="bio.tools">scikit-image</xref>
16 <xref type="biii">scikit-image</xref> 16 <xref type="biii">scikit-image</xref>
17 </xrefs> 17 </xrefs>
18 <requirements> 18 <requirements>
19 <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement> 19 <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement>
20 <requirement type="package" version="2.2.2">pandas</requirement> 20 <requirement type="package" version="2.2.2">pandas</requirement>
21 <requirement type="package" version="1.23.3">numpy</requirement> 21 <requirement type="package" version="1.23.3">numpy</requirement>
22 <requirement type="package" version="2020.10.1">tifffile</requirement> 22 <requirement type="package" version="2020.10.1">tifffile</requirement>
23 <requirement type="package" version="0.1">giatools</requirement> 23 <requirement type="package" version="0.1">giatools</requirement>
35 #end if 35 #end if
36 '$input_label' '$output' 36 '$input_label' '$output'
37 ]]> 37 ]]>
38 </command> 38 </command>
39 <inputs> 39 <inputs>
40 <param name="input_label" type="data" format="tiff,png" label="Label map" /> 40 <param name="input_label" type="data" format="tiff,png" label="Label map"/>
41 <conditional name="use_raw_option"> 41 <conditional name="use_raw_option">
42 <param label="Use the intensity image to compute additional features" name="use_raw" type="select"> 42 <param label="Use the intensity image to compute additional features" name="use_raw" type="select">
43 <option selected="True" value="no_original">No intensity image</option> 43 <option selected="True" value="no_original">No intensity image</option>
44 <option value="raw_image">Use intensity image</option> 44 <option value="raw_image">Use intensity image</option>
45 </param> 45 </param>
46 <when value="no_original"></when> 46 <when value="no_original"/>
47 <when value="raw_image"> 47 <when value="raw_image">
48 <param name="input_raw" type="data" format="tiff,png" label="Intensity image" /> 48 <param name="input_raw" type="data" format="tiff,png" label="Intensity image"/>
49 </when> 49 </when>
50 </conditional> 50 </conditional>
51 <conditional name="feature_options"> 51 <conditional name="feature_options">
52 <param label="Select features to compute" name="features" type="select"> 52 <param label="Select features to compute" name="features" type="select">
53 <option selected="True" value="all">All features</option> 53 <option selected="True" value="all">All features</option>
82 </param> 82 </param>
83 </when> 83 </when>
84 </conditional> 84 </conditional>
85 </inputs> 85 </inputs>
86 <outputs> 86 <outputs>
87 <data format="tabular" name="output" /> 87 <data format="tabular" name="output"/>
88 </outputs> 88 </outputs>
89 <tests> 89 <tests>
90 <test> 90 <test>
91 <param name="input_label" value="input.tiff"/> 91 <param name="input_label" value="input.tiff" ftype="tiff"/>
92 <param name="features" value="select"/> 92 <conditional name="feature_options">
93 <param name="selected_features" value="--label,--area"/> 93 <param name="features" value="select"/>
94 <param name="selected_features" value="--label,--area"/>
95 </conditional>
94 <output name="output" ftype="tabular" value="out.tsv"/> 96 <output name="output" ftype="tabular" value="out.tsv"/>
95 </test> 97 </test>
96 </tests> 98 </tests>
97 <help> 99 <help>
98 100