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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
author imgteam
date Wed, 24 Apr 2024 08:11:54 +0000
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3f3783846dc0 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c045f067a57e8308308cf6329060c7ccd3fc372f
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1 <tool id="ip_histogram_equalization" name="Perform histogram equalization" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
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2 <description>with scikit-image</description>
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3 <macros>
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4 <import>creators.xml</import>
3f3783846dc0 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c045f067a57e8308308cf6329060c7ccd3fc372f
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5 <import>tests.xml</import>
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b1c2c210813c planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
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6 <token name="@TOOL_VERSION@">0.18.1</token>
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7 <token name="@VERSION_SUFFIX@">0</token>
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8 </macros>
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9 <creator>
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10 <expand macro="creators/bmcv" />
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11 </creator>
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12 <edam_operations>
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13 <edam_operation>operation_3443</edam_operation>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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14 </edam_operations>
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15 <xrefs>
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16 <xref type="bio.tools">scikit-image</xref>
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17 <xref type="biii">scikit-image</xref>
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18 </xrefs>
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19 <requirements>
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20 <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement>
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b1c2c210813c planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
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21 <requirement type="package" version="1.23.3">numpy</requirement>
b1c2c210813c planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
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22 <requirement type="package" version="2020.10.1">tifffile</requirement>
b1c2c210813c planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
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23 <requirement type="package" version="0.1">giatools</requirement>
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24 </requirements>
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25 <command detect_errors="aggressive">
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26 <![CDATA[
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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27 python '$__tool_directory__/histogram_equalization.py' '$input' '$output' $h_type
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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28 ]]>
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29 </command>
77f7159d775a planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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30 <inputs>
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31 <param name="input" type="data" format="tiff" label="Input image" />
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32 <param name="h_type" type="select" label="Histogram equalization algorithm">
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33 <option value="default">Stretching</option>
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34 <option value="clahe" selected="True">CLAHE</option>
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35 </param>
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36 </inputs>
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37 <outputs>
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38 <data format="tiff" name="output" />
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39 </outputs>
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40 <tests>
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41 <test>
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42 <param name="input" value="sample.tif"/>
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43 <param name="h_type" value="default"/>
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44 <expand macro="tests/intensity_image_diff" name="output" value="out.tif" ftype="tiff"/>
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45 </test>
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46 </tests>
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47 <help>
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48
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49 **Applies histogram equalization to an image.**
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50
0
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51 </help>
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52 <citations>
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53 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
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54 </citations>
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55 </tool>