Mercurial > repos > imgteam > 2d_histogram_equalization

diff histogram_equalization.xml @ 0:70316d792fc9 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_histogram_equalization/ commit 767d7fec860d01468701c4e6dc270a7f1c74d53c
author imgteam
date Tue, 23 Jul 2019 14:07:07 -0400
parents
children 77f7159d775a
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/histogram_equalization.xml	Tue Jul 23 14:07:07 2019 -0400
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+<tool id="ip_histogram_equalization" name="Histogram equalization" version="0.0.1">
+   <description>automatic histogram equalization</description>
+   <requirements> 
+        <requirement type="package" version="0.14.2">scikit-image</requirement>
+        <requirement type="package" version="1.15.4">numpy</requirement>
+        <requirement type="package" version="5.3.0">pillow</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
+   </requirements>
+   <command detect_errors="aggressive">
+   <![CDATA[
+   python '$__tool_directory__/histogram_equalization.py' '$input' '$output' $h_type
+   ]]>
+   </command>
+   <inputs>
+        <param name="input" type="data" format="tiff" label="Source file" />
+        <param name="h_type" type="select" label="Histogram Equalization Algorithm">
+          <option value="default">Stretching</option>
+          <option value="clahe" selected="True">CLAHE</option>
+        </param>
+    </inputs>
+    <outputs>
+       <data format="tiff" name="output" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="sample.tif"/>
+            <output name="output" value="out.tif" ftype="tiff" compare="sim_size"/>
+            <param name="h_type" value="default"/>
+        </test>
+    </tests>
+    <help>
+        Applies histogram equalization to an image.
+    </help>
+    <citations>
+        <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
+    </citations>
+</tool>