Mercurial > repos > imgteam > 2d_histogram_equalization
diff histogram_equalization.py @ 3:b1c2c210813c draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/2d_histogram_equalization/ commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:11:54 +0000 |
| parents | 77f7159d775a |
| children |
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--- a/histogram_equalization.py Thu Apr 04 15:23:34 2024 +0000 +++ b/histogram_equalization.py Wed Apr 24 08:11:54 2024 +0000 @@ -1,6 +1,7 @@ import argparse import sys +import giatools.io import skimage.exposure import skimage.io import skimage.util @@ -17,7 +18,7 @@ parser.add_argument('h_type', choices=hOptions.keys(), help='histogram equalization method') args = parser.parse_args() - img_in = skimage.io.imread(args.input_file.name) + img_in = giatools.io.imread(args.input_file.name) res = hOptions[args.h_type](img_in) res = skimage.util.img_as_uint(res) skimage.io.imsave(args.out_file.name, res, plugin="tifffile")