Mercurial > repos > imgteam > 2d_local_threshold

diff auto_local_threshold.py @ 3:be2d3ce89c0f draft default tip

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/2d_auto_local_threshold/ commit b1b3c63ab021aa77875c3b04127f6836024812f9"
author imgteam
date Sat, 19 Feb 2022 15:17:19 +0000
parents 497dcd834bb3
children
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--- a/auto_local_threshold.py	Wed Dec 18 05:00:26 2019 -0500
+++ b/auto_local_threshold.py	Sat Feb 19 15:17:19 2022 +0000
@@ -1,9 +1,10 @@
 import argparse
 import sys
-import skimage.io
+
+import numpy as np
 import skimage.filters
+import skimage.io
 import skimage.util
-import numpy as np
 
 threshOptions = {
     'gaussian': lambda img_raw, bz: skimage.filters.threshold_local(img_raw, bz, method='gaussian'),
@@ -24,7 +25,7 @@
     img_in = np.reshape(img_in, [img_in.shape[0], img_in.shape[1]])
     thresh = threshOptions[args.thresh_type](img_in, args.block_size)
 
-    if args.dark_background: 
+    if args.dark_background:
         res = img_in > thresh
     else:
         res = img_in <= thresh