Mercurial > repos > imgteam > bfconvert

changeset 2:b07f4839ca77 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/bfconvert/ commit 65c88d4905b144613b179b99376412073e75f81c
author imgteam
date Mon, 22 Jul 2019 13:34:12 -0400
parents 6317c4a379b2
children f3360fbeda64
files bfconvert.xml
diffstat 1 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/bfconvert.xml	Mon Jul 22 12:45:14 2019 -0400
+++ b/bfconvert.xml	Mon Jul 22 13:34:12 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="ip_convertimage" name="Convert image" version="0.3"> 
+<tool id="ip_convertimage" name="Convert image" version="0.4"> 
   <description>Convert image</description>
   <requirements>
         <requirement type="package" version="5.7.1">bftools</requirement>
@@ -27,7 +27,8 @@
         #if $tile_options['extract'] == 'True'
         -tilex $tile_x -tiley $tile_y
         #end if
-        '$input_file' ./res.$out_format        
+        '$input_file' ./res.$out_format  &&
+        mv ./res.$out_format ./result_image
         ]]>
   </command>
   <inputs>
@@ -119,7 +120,7 @@
     </conditional>
   </inputs>
   <outputs>
-    <data format="tiff" name="output" from_work_dir="res.tiff">
+    <data format="tiff" name="output" from_work_dir="result_image">
         <change_format>
             <when input="out_format" value="tiff" format="tiff" />
             <when input="out_format" value="png" format="png" />
@@ -141,7 +142,7 @@
   <help>
     **What it does**
 
-    Convert image to tiff using bioformats.
+   Universial image converter using bioformats.
     </help>
     <citations>
         <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>