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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:10:37 +0000
parents cb1eaebdb4c4
children
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f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
imgteam
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1 <tool id="ip_binaryimage_to_points" name="Convert binary image to points (center of masses)" version="0.1-2">
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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2 <description></description>
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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3 <edam_operations>
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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4 <edam_operation>operation_3443</edam_operation>
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
imgteam
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5 </edam_operations>
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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6 <xrefs>
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
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7 <xref type="bio.tools">galaxy_image_analysis</xref>
f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
imgteam
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8 </xrefs>
0
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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9 <requirements>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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10 <requirement type="package" version="1.15.4">numpy</requirement><!--https://github.com/numpy/numpy/pull/432 -->
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f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
imgteam
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11 <requirement type="package" version="0.14.2">scikit-image</requirement>
0
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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12 <requirement type="package" version="0.23.4">pandas</requirement>
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f38f42d55813 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
imgteam
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13 <requirement type="package" version="0.15.1">tifffile</requirement>
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cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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14 </requirements>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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15 <command>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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16 <![CDATA[
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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17 python '$__tool_directory__/binaryimage2points.py' '$input' '$output'
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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18 ]]>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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19 </command>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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20 <inputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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21 <param name="input" type="data" format="tiff" label="Binary Image File"/>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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22 </inputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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23 <outputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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24 <data format="tabular" name="output"/>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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25 </outputs>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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26 <tests>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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27 <test>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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28 <param name="input" value="galaxyIcon_noText.tif" />
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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29 <output name="output" value="points.tsv" ftype="tabular" />
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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30 </test>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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31 </tests>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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32 <help>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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33 **What it does**
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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34
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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35 This tool converts an image to points.</help>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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36 <citations>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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37 <citation type="doi">10.7717/peerj.453</citation>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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38 </citations>
cb1eaebdb4c4 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/binaryimage2points/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
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39 </tool>