Mercurial > repos > imgteam > binaryimage2points
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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/binaryimage2points/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author | imgteam |
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date | Mon, 13 Nov 2023 22:10:37 +0000 |
parents | cb1eaebdb4c4 |
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<tool id="ip_binaryimage_to_points" name="Convert binary image to points (center of masses)" version="0.1-2"> <description></description> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">galaxy_image_analysis</xref> </xrefs> <requirements> <requirement type="package" version="1.15.4">numpy</requirement><!--https://github.com/numpy/numpy/pull/432 --> <requirement type="package" version="0.14.2">scikit-image</requirement> <requirement type="package" version="0.23.4">pandas</requirement> <requirement type="package" version="0.15.1">tifffile</requirement> </requirements> <command> <![CDATA[ python '$__tool_directory__/binaryimage2points.py' '$input' '$output' ]]> </command> <inputs> <param name="input" type="data" format="tiff" label="Binary Image File"/> </inputs> <outputs> <data format="tabular" name="output"/> </outputs> <tests> <test> <param name="input" value="galaxyIcon_noText.tif" /> <output name="output" value="points.tsv" ftype="tabular" /> </test> </tests> <help> **What it does** This tool converts an image to points.</help> <citations> <citation type="doi">10.7717/peerj.453</citation> </citations> </tool>