Mercurial > repos > imgteam > colocalization_viz
comparison colocalization_viz.xml @ 0:9ddb11b272ee draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/colocalization_viz/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
| author | imgteam |
|---|---|
| date | Sat, 09 Feb 2019 14:32:01 -0500 |
| parents | |
| children | fc85eb253163 |
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| -1:000000000000 | 0:9ddb11b272ee |
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| 1 <tool id="ip_colocalization" name="Colocalization" version="0.0.6"> | |
| 2 <description>of two segmentation maps</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.14.2">scikit-image</requirement> | |
| 5 <requirement type="package" version="1.15.4">numpy</requirement> | |
| 6 </requirements> | |
| 7 <command detect_errors="aggressive"> | |
| 8 <![CDATA[ | |
| 9 python '$__tool_directory__/colocalization_viz.py' '$input_mask1' '$input_mask2' ./out.png | |
| 10 ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param name="input_mask1" type="data" format="tiff" label="Mask1 Source File" /> | |
| 14 <param name="input_mask2" type="data" format="tiff" label="Mask2 Source File" /> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data format="png" name="output" from_work_dir="out.png"/> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 <test> | |
| 21 <param name="input_mask1" value="sample1.tiff"/> | |
| 22 <param name="input_mask2" value="sample2.tiff"/> | |
| 23 <output name="output" value="out.png" ftype="png" compare="sim_size"/> | |
| 24 </test> | |
| 25 </tests> | |
| 26 <help> | |
| 27 **What it does** | |
| 28 | |
| 29 This tool overlays two segmentation maps and displays the colocalization results. | |
| 30 </help> | |
| 31 <citations> | |
| 32 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 33 </citations> | |
| 34 </tool> |