Mercurial > repos > imgteam > colocalization_viz

comparison colocalization_viz.py @ 3:0f8652663a03 draft default tip

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/colocalization_viz/ commit 0500f513ee291ae0f6fad32a0b4fad05cd59cb71"
author imgteam
date Sat, 26 Feb 2022 17:13:42 +0000
parents c73332d5c3bb
children
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2:c73332d5c3bb 3:0f8652663a03
1 import skimage.io
2 import skimage.color
3 from skimage import img_as_uint
4 from skimage.exposure import equalize_adapthist
5 import numpy as np
6 import argparse 1 import argparse
7 import sys 2 import sys
8 3
4 import numpy as np
5 import skimage.color
6 import skimage.io
7 from skimage import img_as_uint
8 from skimage.exposure import equalize_adapthist
9 9
10 # TODO make importable by python script 10
11 # TODO make importable by python script
11 def readImg(path): 12 def readImg(path):
12 img = skimage.io.imread(path) 13 img = skimage.io.imread(path)
13 14
14 if len(img.shape) > 2: 15 if len(img.shape) > 2:
15 img = skimage.color.rgb2gray(img) 16 img = skimage.color.rgb2gray(img)