# HG changeset patch
# User imgteam
# Date 1563786120 14400
# Node ID 0976b373a321285522fbc9067d007e0c26768174
# Parent  8aa6e767f7375edff1b552229ae9400bab06470c
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/color-deconvolution/ commit b2acc1845a25828181597fe5b6982fe116a7796d

diff -r 8aa6e767f737 -r 0976b373a321 color-deconvolution.xml
--- a/color-deconvolution.xml	Sat Feb 09 14:32:37 2019 -0500
+++ b/color-deconvolution.xml	Mon Jul 22 05:02:00 2019 -0400
@@ -1,13 +1,14 @@
-<tool id="ip_color_deconvolution" name="Color Deconvolution" version="0.7">
+<tool id="ip_color_deconvolution" name="Color Deconvolution" version="0.8"> 
     <description>Color deconvolution</description>
     <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
         <requirement type="package" version="4.0.0">pillow</requirement>
         <requirement type="package" version="0.18.1">scikit-learn</requirement>
         <requirement type="package" version="1.12">numpy</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
     </requirements>
-    <command>
-        <![CDATA[
+    <command detect_errors="aggressive">
+        <![CDATA[ 
         python '$__tool_directory__/color_deconvolution.py' '$input' '$output' '$convtype'
         ]]>
     </command>
diff -r 8aa6e767f737 -r 0976b373a321 color_deconvolution.py
--- a/color_deconvolution.py	Sat Feb 09 14:32:37 2019 -0500
+++ b/color_deconvolution.py	Mon Jul 22 05:02:00 2019 -0400
@@ -74,7 +74,7 @@
 parser.add_argument('input_file', type=argparse.FileType('r'), default=sys.stdin, help='input file')
 parser.add_argument('out_file', type=argparse.FileType('w'), default=sys.stdin, help='out file (TIFF)')
 parser.add_argument('conv_type', choices=convOptions.keys(), help='conversion type')
-args = parser.parse_args()
+args = parser.parse_args() 
 
 img_in = skimage.io.imread(args.input_file.name)[:,:,0:3]
 res = convOptions[args.conv_type](img_in)