Mercurial > repos > imgteam > colorize_labels
diff colorize_labels.xml @ 2:3aa2d054848a draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/colorize_labels commit c045f067a57e8308308cf6329060c7ccd3fc372f
author | imgteam |
---|---|
date | Thu, 04 Apr 2024 15:25:22 +0000 |
parents | 43c80f3c3b60 |
children | 2d1de6e7b113 |
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--- a/colorize_labels.xml Wed Mar 13 19:08:34 2024 +0000 +++ b/colorize_labels.xml Thu Apr 04 15:25:22 2024 +0000 @@ -1,14 +1,19 @@ <tool id="colorize_labels" name="Colorize label map" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> <description>with NetworkX</description> <macros> + <import>creators.xml</import> + <import>tests.xml</import> <token name="@TOOL_VERSION@">3.2.1</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> </macros> + <creator> + <expand macro="creators/bmcv" /> + </creator> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <requirements> - <requirement type="package" version="3.2.1">networkx</requirement> + <requirement type="package" version="@TOOL_VERSION@">networkx</requirement> <requirement type="package" version="1.22">numpy</requirement> <requirement type="package" version="0.18.1">scikit-image</requirement> </requirements> @@ -42,18 +47,23 @@ <param name="radius" value="1" /> <param name="bg_label" value="0" /> <param name="bg_color" value="#5a5a5a" /> - <output name="output" value="output1.png" ftype="png" compare="sim_size" delta_frac="0.1" /> + <expand macro="tests/intensity_image_diff" name="output" value="output1.png" ftype="png"> + <has_image_channels channels="3"/> + </expand> </test> <test> <param name="input" value="input2.tif" /> <param name="radius" value="10" /> <param name="bg_label" value="0" /> <param name="bg_color" value="#ffffff" /> - <output name="output" value="output2.png" ftype="png" compare="sim_size" delta_frac="0.1" /> + <expand macro="tests/intensity_image_diff" name="output" value="output2.png" ftype="png"> + <has_image_channels channels="3"/> + </expand> </test> </tests> <help> - Colorize a 2-D label map for visualization using greedy coloring. + + **Colorizes a 2-D label map for visualization using greedy coloring.** Label maps are produced by segmentation and other image analysis steps. Direct inspection of label maps can be difficult, @@ -61,6 +71,7 @@ distinguish visually from each other and from the image background. To facilitate the visual inspection of label maps, this tools converts label maps to color images, by assigning each label a unique color. + </help> <citations> <citation type="bibtex">