Mercurial > repos > imgteam > concat_channels

comparison concat_channels.xml @ 0:30517f733f7b draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/concat_channels/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:33:14 -0500
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children d42501109c05
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1 <tool id="ip_concat_channels" name="Concatenate images" version="0.1">
2 <description></description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement>
6 </requirements>
7 <command>
8 <![CDATA[
9 python '$__tool_directory__/concat_channels.py'
10 #for $input in $inputs
11 '$input'
12 #end for
13 -o '$output' --axis '$axis'
14 ]]>
15 </command>
16 <inputs>
17 <param name="inputs" type="data" multiple="true" format="tiff,png,jpg,bmp" label="Binary Image Files" help="one or multiple binary image fiels"/>
18 <param name="axis" type="select" label="Concatenation Axis">
19 <option value="0">0</option>
20 <option value="2">2</option>
21 </param>
22 </inputs>
23 <outputs>
24 <data format="tiff" name="output"/>
25 </outputs>
26 <tests>
27 <test>
28 <param name="inputs" value="sample1.png,sample2.png"/>
29 <param name="axis" value="0"/>
30 <output name="output" value="res.tiff" ftype="tiff" compare="sim_size"/>
31 </test>
32 </tests>
33 <help>
34 **What it does**
35
36 This tool concatenates images.
37 </help>
38 <citations>
39 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
40 </citations>
41 </tool>