Mercurial > repos > imgteam > concat_channels
diff concat_channels.xml @ 0:30517f733f7b draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/concat_channels/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author | imgteam |
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date | Sat, 09 Feb 2019 14:33:14 -0500 |
parents | |
children | d42501109c05 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/concat_channels.xml Sat Feb 09 14:33:14 2019 -0500 @@ -0,0 +1,41 @@ +<tool id="ip_concat_channels" name="Concatenate images" version="0.1"> + <description></description> + <requirements> + <requirement type="package" version="0.14.2">scikit-image</requirement> + <requirement type="package" version="1.15.4">numpy</requirement> + </requirements> + <command> + <![CDATA[ + python '$__tool_directory__/concat_channels.py' + #for $input in $inputs + '$input' + #end for + -o '$output' --axis '$axis' + ]]> + </command> + <inputs> + <param name="inputs" type="data" multiple="true" format="tiff,png,jpg,bmp" label="Binary Image Files" help="one or multiple binary image fiels"/> + <param name="axis" type="select" label="Concatenation Axis"> + <option value="0">0</option> + <option value="2">2</option> + </param> + </inputs> + <outputs> + <data format="tiff" name="output"/> + </outputs> + <tests> + <test> + <param name="inputs" value="sample1.png,sample2.png"/> + <param name="axis" value="0"/> + <output name="output" value="res.tiff" ftype="tiff" compare="sim_size"/> + </test> + </tests> + <help> + **What it does** + + This tool concatenates images. + </help> + <citations> + <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> + </citations> +</tool>