Mercurial > repos > imgteam > concat_channels

changeset 1:d42501109c05 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/concat_channels/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 05:02:26 -0400
parents 30517f733f7b
children 212627bfb759
files concat_channels.py concat_channels.xml
diffstat 2 files changed, 5 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/concat_channels.py	Sat Feb 09 14:33:14 2019 -0500
+++ b/concat_channels.py	Mon Jul 22 05:02:26 2019 -0400
@@ -11,7 +11,7 @@
         raw_image = skimage.io.imread(image_path)
         if len(raw_image.shape) == 2:
             if axis == 0:
-                raw_image = [raw_image]
+                raw_image = [raw_image] 
             else:
                 raw_image = np.expand_dims(raw_image, 2)
         images.append(raw_image)
--- a/concat_channels.xml	Sat Feb 09 14:33:14 2019 -0500
+++ b/concat_channels.xml	Mon Jul 22 05:02:26 2019 -0400
@@ -1,14 +1,15 @@
-<tool id="ip_concat_channels" name="Concatenate images" version="0.1">
+<tool id="ip_concat_channels" name="Concatenate images" version="0.2"> 
     <description></description>
     <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
         <requirement type="package" version="1.15.4">numpy</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
     </requirements>
-    <command>
+    <command detect_errors="aggressive">
     <![CDATA[
         python '$__tool_directory__/concat_channels.py' 
         #for $input in $inputs
-            '$input'
+            '$input' 
         #end for
         -o '$output' --axis '$axis'
     ]]>