Mercurial > repos > imgteam > coordinates_of_roi
comparison coordinates_of_roi.py @ 2:24d9bd16c953 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/coordinates_of_roi/ commit bfae746780819634a014388ea4671a49fc5c178d
author | imgteam |
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date | Wed, 20 Mar 2019 09:18:06 -0400 |
parents | ee045a6bbdef |
children | 02a686fc1654 |
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1:ee045a6bbdef | 2:24d9bd16c953 |
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14 img_width = data.shape[1] | 14 img_width = data.shape[1] |
15 for j in range(img_width): | 15 for j in range(img_width): |
16 for i in range(img_height): | 16 for i in range(img_height): |
17 if white_obj == False: | 17 if white_obj == False: |
18 if data[i,j] <= threshold: | 18 if data[i,j] <= threshold: |
19 x.append(j + offset[0]) | 19 x.append(i + offset[0]) |
20 y.append(img_height-(i+1) + offset[1]) | 20 y.append(j + offset[1]) |
21 elif data[i,j] >= threshold: | 21 elif data[i,j] >= threshold: |
22 x.append(j + offset[0]) | 22 x.append(i + offset[0]) |
23 y.append(img_height-(i+1) + offset[1]) | 23 y.append(j + offset[1]) |
24 | 24 |
25 df = pd.DataFrame() | 25 df = pd.DataFrame() |
26 df['x'] = x | 26 df['x'] = x |
27 df['y'] = y | 27 df['y'] = y |
28 df.to_csv(pixel_table, sep="\t", index = False) | 28 df.to_csv(pixel_table, sep="\t", index = False) |