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comparison detection_viz.xml @ 0:3f738d5d91bf draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:35:39 -0500
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1 <tool id="ip_detection_viz" name="Detection Visualization" version="0.1">
2 <description>Detection Visualization</description>
3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="3.0.2">matplotlib</requirement>
6 </requirements>
7 <command>
8 <![CDATA[
9 python '$__tool_directory__/detection_viz.py' '$input' '$output'
10 --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
15 <param argument="--tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/>
16 <param argument="--fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/>
17 <param argument="--fp" type="boolean" checked="false" falsevalue="" truevalue="--fp"/>
18 <param name="thickness" type="float" value="3.0" label="Stroke thickness"/>
19 <param name="circle_radius" type="float" value="50.0" label="Circle radius"/>
20 </inputs>
21 <outputs>
22 <data format="png" name="output"/>
23 </outputs>
24 <tests>
25 <test>
26 <param name="input" value="sample.png"/>
27 <output name="output" value="out.png" ftype="png"/>
28 </test>
29 </tests>
30 <help>
31 **What it does**
32
33 Draws circles of different colors around detected true positives, false negatives and false positives.
34 </help>
35 <citations>
36 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
37 </citations>
38 </tool>