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comparison detection_viz.xml @ 1:ec1ca4d62192 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 05:02:50 -0400
parents 3f738d5d91bf
children f46f64f9590d
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0:3f738d5d91bf 1:ec1ca4d62192
1 <tool id="ip_detection_viz" name="Detection Visualization" version="0.1"> 1 <tool id="ip_detection_viz" name="Detection Visualization" version="0.2">
2 <description>Detection Visualization</description> 2 <description>Detection Visualization</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="3.0.2">matplotlib</requirement> 5 <requirement type="package" version="3.0.2">matplotlib</requirement>
6 <requirement type="package" version="0.15.1">tifffile</requirement>
6 </requirements> 7 </requirements>
7 <command> 8 <command detect_errors="aggressive">
8 <![CDATA[ 9 <![CDATA[
9 python '$__tool_directory__/detection_viz.py' '$input' '$output' 10 python '$__tool_directory__/detection_viz.py' '$input' '$output'
10 --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp 11 --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
11 ]]> 12 ]]>
12 </command> 13 </command>
13 <inputs> 14 <inputs>
14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/> 15 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>
15 <param argument="--tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/> 16 <param argument="--tp" type="boolean" checked="false" falsevalue="" truevalue="--tp"/>
16 <param argument="--fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/> 17 <param argument="--fn" type="boolean" checked="false" falsevalue="" truevalue="--fn"/>