Mercurial > repos > imgteam > detection_viz

changeset 1:ec1ca4d62192 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/detection_viz/ commit b2acc1845a25828181597fe5b6982fe116a7796d
author imgteam
date Mon, 22 Jul 2019 05:02:50 -0400
parents 3f738d5d91bf
children f46f64f9590d
files detection_viz.py detection_viz.xml
diffstat 2 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/detection_viz.py	Sat Feb 09 14:35:39 2019 -0500
+++ b/detection_viz.py	Mon Jul 22 05:02:50 2019 -0400
@@ -2,7 +2,7 @@
 import sys
 import os
 import csv
-
+ 
 import matplotlib
 matplotlib.use('Agg')
 import matplotlib.pyplot as plt
--- a/detection_viz.xml	Sat Feb 09 14:35:39 2019 -0500
+++ b/detection_viz.xml	Mon Jul 22 05:02:50 2019 -0400
@@ -1,14 +1,15 @@
-<tool id="ip_detection_viz" name="Detection Visualization" version="0.1">
+<tool id="ip_detection_viz" name="Detection Visualization" version="0.2"> 
     <description>Detection Visualization</description>
     <requirements>
         <requirement type="package" version="0.14.2">scikit-image</requirement>
-      <requirement type="package" version="3.0.2">matplotlib</requirement>
+        <requirement type="package" version="3.0.2">matplotlib</requirement>
+        <requirement type="package" version="0.15.1">tifffile</requirement>
     </requirements>
-    <command>
+    <command detect_errors="aggressive">
         <![CDATA[
         python '$__tool_directory__/detection_viz.py' '$input' '$output' 
         --stroke_size $thickness --circle_radius $circle_radius $tp $fn $fp
-        ]]>
+        ]]> 
     </command>
     <inputs>
         <param name="input" type="data" format="tiff,png,jpg,bmp" label="Binary Image File"/>