Mercurial > repos > imgteam > image_math
annotate tests.xml @ 2:48fa3ac55df2 draft default tip
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c86a1b93cb7732f7331a981d13465653cc1a2790
| author | imgteam |
|---|---|
| date | Wed, 24 Apr 2024 08:12:29 +0000 |
| parents | f8b7770cbca5 |
| children |
| rev | line source |
|---|---|
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1
f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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1 <macros> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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2 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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3 <!-- Macros for verification of image outputs --> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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4 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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5 <xml |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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6 name="tests/binary_image_diff" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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7 tokens="name,value,ftype,metric,eps" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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8 token_metric="mae" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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9 token_eps="0.01"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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10 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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11 <output name="@NAME@" value="@VALUE@" ftype="@FTYPE@" compare="image_diff" metric="@METRIC@" eps="@EPS@" pin_labels="0"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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12 <assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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13 <has_image_n_labels n="2"/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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14 <yield/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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15 </assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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16 </output> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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17 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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18 </xml> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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19 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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20 <xml |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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21 name="tests/label_image_diff" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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22 tokens="name,value,ftype,metric,eps,pin_labels" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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23 token_metric="iou" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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24 token_eps="0.01" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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25 token_pin_labels="0"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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26 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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27 <output name="@NAME@" value="@VALUE@" ftype="@FTYPE@" compare="image_diff" metric="@METRIC@" eps="@EPS@" pin_labels="@PIN_LABELS@"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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28 <assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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29 <yield/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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30 </assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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31 </output> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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32 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
diff
changeset
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33 </xml> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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34 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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35 <xml |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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36 name="tests/intensity_image_diff" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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37 tokens="name,value,ftype,metric,eps" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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38 token_metric="rms" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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39 token_eps="0.01"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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40 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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41 <output name="@NAME@" value="@VALUE@" ftype="@FTYPE@" compare="image_diff" metric="@METRIC@" eps="@EPS@"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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changeset
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42 <assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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43 <yield/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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44 </assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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45 </output> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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46 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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47 </xml> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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48 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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49 <!-- Variants of the above for verification of collection elements --> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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50 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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51 <xml |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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52 name="tests/binary_image_diff/element" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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53 tokens="name,value,ftype,metric,eps" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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54 token_metric="mae" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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55 token_eps="0.01"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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56 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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57 <element name="@NAME@" value="@VALUE@" ftype="@FTYPE@" compare="image_diff" metric="@METRIC@" eps="@EPS@" pin_labels="0"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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58 <assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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59 <has_image_n_labels n="2"/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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60 <yield/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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61 </assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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62 </element> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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63 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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64 </xml> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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65 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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66 <xml |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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67 name="tests/label_image_diff/element" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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68 tokens="name,value,ftype,metric,eps" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
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69 token_metric="iou" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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70 token_eps="0.01" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
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71 token_pin_labels="0"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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72 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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73 <element name="@NAME@" value="@VALUE@" ftype="@FTYPE@" compare="image_diff" metric="@METRIC@" eps="@EPS@" pin_labels="@PIN_LABELS@"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
parents:
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74 <assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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75 <yield/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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76 </assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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77 </element> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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78 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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79 </xml> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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80 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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81 <xml |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
imgteam
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82 name="tests/intensity_image_diff/element" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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83 tokens="name,value,ftype,metric,eps" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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84 token_metric="rms" |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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85 token_eps="0.01"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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86 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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87 <element name="@NAME@" value="@VALUE@" ftype="@FTYPE@" compare="image_diff" metric="@METRIC@" eps="@EPS@"> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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88 <assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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89 <yield/> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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90 </assert_contents> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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91 </element> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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92 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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93 </xml> |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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94 |
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f8b7770cbca5
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/image_math commit c045f067a57e8308308cf6329060c7ccd3fc372f
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95 </macros> |