Mercurial > repos > imgteam > image_registration_affine

comparison image_registration_affine.xml @ 2:77dc68af2b40 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/image_registration_affine/ commit ded1703bcd6e295b26201505edb58381991b265e"
author imgteam
date Mon, 28 Feb 2022 17:35:49 +0000
parents fa769715b6b0
children 5030651c2993
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1:fa769715b6b0 2:77dc68af2b40
1 <tool id="ip_image_registration" name="Image Registration" version="0.0.2" profile="20.05"> 1 <tool id="ip_image_registration" name="Image Registration" version="0.0.3" profile="20.05">
2 <description>based on intensity information</description> 2 <description>based on intensity information</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.18.1">scikit-image</requirement> 4 <requirement type="package" version="0.18.1">scikit-image</requirement>
5 <requirement type="package" version="1.6.2">scipy</requirement> 5 <requirement type="package" version="1.6.2">scipy</requirement>
6 <requirement type="package" version="1.2.4">pandas</requirement> 6 <requirement type="package" version="1.2.4">pandas</requirement>
20 <inputs> 20 <inputs>
21 <param name="fn_moving" type="data" format="tiff,png,jpg" label="Moving image" /> 21 <param name="fn_moving" type="data" format="tiff,png,jpg" label="Moving image" />
22 <param name="fn_fixed" type="data" format="tiff,png,jpg" label="Fixed (reference) image" /> 22 <param name="fn_fixed" type="data" format="tiff,png,jpg" label="Fixed (reference) image" />
23 <param name="sigma" type="float" value="3" label="Sigma of Gaussian filter for smoothing input images" /> 23 <param name="sigma" type="float" value="3" label="Sigma of Gaussian filter for smoothing input images" />
24 <param name="metric" type="select" label="Image similarity metric"> 24 <param name="metric" type="select" label="Image similarity metric">
25 <option value="lcc" selected="True">Local cross-correlation</option> 25 <option value="mse" selected="True">Mean squared error</option>
26 <option value="mse">Mean squared error</option>
27 <option value="mae">Mean absolute error</option> 26 <option value="mae">Mean absolute error</option>
27 <option value="lcc">Local cross-correlation</option>
28 </param> 28 </param>
29 </inputs> 29 </inputs>
30 <outputs> 30 <outputs>
31 <data format="tabular" name="fn_tmat" /> 31 <data format="tabular" name="fn_tmat" />
32 </outputs> 32 </outputs>