Mercurial > repos > imgteam > imagecoordinates_flipaxis
comparison imagecoordinates_flipaxis.xml @ 0:5a210baa2ff1 draft
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 67eaf2b9a9ee1bfed14afba33007ef595890400c
| author | imgteam |
|---|---|
| date | Wed, 20 Mar 2019 12:06:07 -0400 |
| parents | |
| children | d0960e1b25a8 |
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| -1:000000000000 | 0:5a210baa2ff1 |
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| 1 <tool id="imagecoordinates_flipaxis" name="Switch axis coordinates" version="0.1"> | |
| 2 <description>Switches the axes of an image and flips the y axis.</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="0.23.4" >pandas</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="aggressive"> | |
| 7 <![CDATA[ | |
| 8 python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height | |
| 9 ]]> | |
| 10 </command> | |
| 11 <inputs> | |
| 12 <param name="input" type="data" format="tabular" label="File with image coordinates"/> | |
| 13 <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output" format="tabular"/> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="table.tsv" /> | |
| 21 <param name="img_height" value="500"/> | |
| 22 <output name="output" value="out2.tsv" ftype="tabular" /> | |
| 23 </test> | |
| 24 </tests> | |
| 25 <help>Makes x the horizontal axis (left to right) and y the vertical axis (bottom to top), | |
| 26 like in a coordinate system.</help> | |
| 27 <citations> | |
| 28 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> | |
| 29 </citations> | |
| 30 </tool> |