Mercurial > repos > imgteam > imagecoordinates_flipaxis

comparison imagecoordinates_flipaxis.xml @ 1:d0960e1b25a8 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit da043bdec956714abb0fa82f278931bbe1a6d41d
author imgteam
date Mon, 25 Mar 2019 11:15:54 -0400
parents 5a210baa2ff1
children f8f1100d0701
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0:5a210baa2ff1 1:d0960e1b25a8
4 <requirement type="package" version="0.23.4" >pandas</requirement> 4 <requirement type="package" version="0.23.4" >pandas</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height 8 python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height
9 $offset_x $offset_y
9 ]]> 10 ]]>
10 </command> 11 </command>
11 <inputs> 12 <inputs>
12 <param name="input" type="data" format="tabular" label="File with image coordinates"/> 13 <param name="input" type="data" format="tabular" label="File with image coordinates"/>
13 <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/> 14 <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/>
14 </inputs> 15 <param name="offset_x" type="integer" value="0" label="Added offset in x direction (=width direction)" />
16 <param name="offset_y" type="integer" value="0" label="Added offset in y direction (=height direction)" />
17 </inputs>
15 <outputs> 18 <outputs>
16 <data name="output" format="tabular"/> 19 <data name="output" format="tabular"/>
17 </outputs> 20 </outputs>
18 <tests> 21 <tests>
19 <test> 22 <test>
20 <param name="input" value="table.tsv" /> 23 <param name="input" value="table.tsv" />
24 <output name="output" value="out.tsv" ftype="tabular" />
21 <param name="img_height" value="500"/> 25 <param name="img_height" value="500"/>
22 <output name="output" value="out2.tsv" ftype="tabular" /> 26 </test>
27 <test>
28 <param name="input" value="table.tsv" />
29 <output name="output" value="out_offset.tsv" ftype="tabular" />
30 <param name="img_height" value="500"/>
31 <param name="offset_x" value="1"/>
32 <param name="offset_y" value="2"/>
23 </test> 33 </test>
24 </tests> 34 </tests>
25 <help>Makes x the horizontal axis (left to right) and y the vertical axis (bottom to top), 35 <help>Makes x the horizontal axis (left to right) and y the vertical axis (bottom to top),
26 like in a coordinate system.</help> 36 like in a coordinate system.</help>
27 <citations> 37 <citations>