Mercurial > repos > imgteam > imagecoordinates_flipaxis

comparison imagecoordinates_flipaxis.xml @ 2:f8f1100d0701 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/imagecoordinates_flipaxis/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:02:25 -0500
parents d0960e1b25a8
children 984b342d03a6
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1:d0960e1b25a8 2:f8f1100d0701
1 <tool id="imagecoordinates_flipaxis" name="Switch axis coordinates" version="0.1"> 1 <tool id="imagecoordinates_flipaxis" name="Switch axis coordinates" version="0.1">
2 <description>Switches the axes of an image and flips the y axis.</description> 2 <description>Switches the axes of an image and flips the y axis.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.23.4" >pandas</requirement> 4 <requirement type="package" version="0.23.4" >pandas</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height 8 python "$__tool_directory__/imagecoordinates_flipaxis.py" '$input' '$output' $img_height
9 $offset_x $offset_y 9 $offset_x $offset_y
12 <inputs> 12 <inputs>
13 <param name="input" type="data" format="tabular" label="File with image coordinates"/> 13 <param name="input" type="data" format="tabular" label="File with image coordinates"/>
14 <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/> 14 <param name="img_height" type="integer" value="100" label="Height of the corresponding image"/>
15 <param name="offset_x" type="integer" value="0" label="Added offset in x direction (=width direction)" /> 15 <param name="offset_x" type="integer" value="0" label="Added offset in x direction (=width direction)" />
16 <param name="offset_y" type="integer" value="0" label="Added offset in y direction (=height direction)" /> 16 <param name="offset_y" type="integer" value="0" label="Added offset in y direction (=height direction)" />
17 </inputs> 17 </inputs>
18 <outputs> 18 <outputs>
19 <data name="output" format="tabular"/> 19 <data name="output" format="tabular"/>
20 </outputs> 20 </outputs>
21 <tests> 21 <tests>
22 <test> 22 <test>