# HG changeset patch # User imgteam # Date 1699913472 0 # Node ID 984b342d03a636f8ec0aa58d94fc5d7230772fbd # Parent f8f1100d07019c141bb9d9528ecbb1dea352fca6 planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/imagecoordinates_flipaxis/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf diff -r f8f1100d0701 -r 984b342d03a6 imagecoordinates_flipaxis.py --- a/imagecoordinates_flipaxis.py Wed Dec 18 05:02:25 2019 -0500 +++ b/imagecoordinates_flipaxis.py Mon Nov 13 22:11:12 2023 +0000 @@ -1,17 +1,17 @@ import argparse + import pandas as pd -def imagecoordinates_flipyaxis(input_file, output_file, image_height, offset=[0,0]): - df = pd.read_csv(input_file, sep='\t') +def imagecoordinates_flipyaxis(input_file, output_file, image_height, offset=[0, 0]): + df = pd.read_csv(input_file, sep='\t') - x = df.copy().y # create copy instead of view - df.y = image_height-(df.x + 1) + offset[1] # since maximal y index = height-1 + x = df.copy().y # create copy instead of view + df.y = image_height - (df.x + 1) + offset[1] # since maximal y index = height-1 df.x = x + offset[0] df.to_csv(output_file, sep="\t", index=False) - if __name__ == "__main__": parser = argparse.ArgumentParser() parser.add_argument('input_file', type=argparse.FileType('r'), help='original file') @@ -21,4 +21,3 @@ parser.add_argument('offset_y', type=int, help='offset in y direction (height)', default=0) args = parser.parse_args() imagecoordinates_flipyaxis(args.input_file.name, args.out_file_str, args.image_height, [args.offset_x, args.offset_y]) - # imagecoordinates_flipyaxis(args.input_file.name, args.out_file_str, int(args.image_height)) diff -r f8f1100d0701 -r 984b342d03a6 imagecoordinates_flipaxis.xml --- a/imagecoordinates_flipaxis.xml Wed Dec 18 05:02:25 2019 -0500 +++ b/imagecoordinates_flipaxis.xml Mon Nov 13 22:11:12 2023 +0000 @@ -1,5 +1,11 @@ - - Switches the axes of an image and flips the y axis. + + + + operation_3443 + + + galaxy_image_analysis + pandas