Mercurial > repos > imgteam > imagej2_adjust_threshold_binary
comparison imagej2_analyze_skeleton_jython_script.py @ 3:2b007b1e6c1b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author | imgteam |
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date | Wed, 25 Sep 2024 16:06:33 +0000 |
parents | da29019170f1 |
children |
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2:da29019170f1 | 3:2b007b1e6c1b |
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119 outf.close() | 119 outf.close() |
120 | 120 |
121 | 121 |
122 # Fiji Jython interpreter implements Python 2.5 which does not | 122 # Fiji Jython interpreter implements Python 2.5 which does not |
123 # provide support for argparse. | 123 # provide support for argparse. |
124 error_log = sys.argv[-8] | |
125 input = sys.argv[-7] | 124 input = sys.argv[-7] |
126 black_background = sys.argv[-6] == "yes" | 125 black_background = sys.argv[-6] == "yes" |
127 prune_cycle_method = sys.argv[-5] | 126 prune_cycle_method = sys.argv[-5] |
128 prune_ends = sys.argv[-4] == "yes" | 127 prune_ends = sys.argv[-4] == "yes" |
129 calculate_largest_shortest_path = sys.argv[-3] == "yes" | 128 calculate_largest_shortest_path = sys.argv[-3] == "yes" |