Mercurial > repos > imgteam > imagej2_adjust_threshold_binary
comparison imagej2_enhance_contrast_jython_script.py @ 3:2b007b1e6c1b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit 8f49f3c66b5a1de99ec15e65c2519a56792f1d56
author | imgteam |
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date | Wed, 25 Sep 2024 16:06:33 +0000 |
parents | da29019170f1 |
children |
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2:da29019170f1 | 3:2b007b1e6c1b |
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2 | 2 |
3 from ij import IJ | 3 from ij import IJ |
4 | 4 |
5 # Fiji Jython interpreter implements Python 2.5 which does not | 5 # Fiji Jython interpreter implements Python 2.5 which does not |
6 # provide support for argparse. | 6 # provide support for argparse. |
7 error_log = sys.argv[-7] | |
8 input = sys.argv[-6] | 7 input = sys.argv[-6] |
9 equalize_histogram = sys.argv[-5] == "yes" | 8 equalize_histogram = sys.argv[-5] == "yes" |
10 saturated_pixels = sys.argv[-4] | 9 saturated_pixels = sys.argv[-4] |
11 normalize = sys.argv[-3] == "yes" | 10 normalize = sys.argv[-3] == "yes" |
12 tmp_output_path = sys.argv[-2] | 11 tmp_output_path = sys.argv[-2] |